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superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation
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ARGDEG-PWY
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NAD+-dependent succinate semialdehyde dehydrogenase|4-aminobutyrate aminotransferase|glutamate-putrescine ligase [PuuA]12|glutamate-putrescine ligase|putrescine aminotransferase|γ-aminobutyraldehyde dehydrogenase|γ-glutamyl-γ-aminobutyrate hydrolase|agmatinase|γ-glutamyl-γ-aminobutyraldehyde dehydrogenase puuC|arginine decarboxylase, degradative|γ-glutamyl-γ-aminobutyrate hydrolase [PuuD]2|succinate-semialdehyde dehydrogenase (NADP+)|γ-glutamyl-γ-aminobutyraldehyde dehydrogenase|γ-glutamylputrescine oxidase
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NADPH|4-aminobutanal|ammonium|H2O|NAD+|putrescine|succinate semialdehyde|NADP+|L-glutamate|phosphate|4-aminobutanoate|CO2|4-(γ-glutamylamino)butanal|urea|γ-glutamyl-L-putrescine|L-arginine|hydrogen peroxide|succinate|oxygen|4-(γ-L-glutamylamino)butanoate|H+|agmatine|2-oxoglutarate|NADH
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45
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γ-glutamyl cycle
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PWY-4041
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γ-glutamyltransferase 1|γ-glutamyl cyclotransferase|γ-glutamyltransferase 5|5-oxo-L-prolinase|cysteinylglycinase / cytosolic leucyl aminopeptidase|glutathione synthetase|aminopeptidase M|glutamate--cysteine ligase
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L-cysteine|H2O|5-oxo-L-proline|glycine|an L-amino acid|glutathione|L-glutamate|L-cysteinyl-glycine|H+|phosphate|an (γ-L-glutamyl)-L-amino acid
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45
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pantothenate and coenzyme A biosynthesis II (plants)
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PWY-4221
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phosphopantothenoylcysteine synthetase|3-hydroxypropanonyl-CoA hydrolase EHD3|pantothenate kinase|ketopantoate hydroxymethyltransferase|phosphopantothenoylcysteine decarboxylase|pantothenate kinase 1|pantoate:β-alanine ligase|dephospho-CoA kinase
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NADPH|2-dehydropantoate|R-4-phosphopantothenoyl-L-cysteine|(R)-pantothenate|3-dephospho-CoA|propanoate|β-alanine|L-cysteine|H2O|a 5,10-methylene-tetrahydrofolate|NAD+|3-hydroxypropanoyl-CoA|NADP+|L-alanine|propanoyl-CoA|pyruvate|CO2|a tetrahydrofolate|(R)-pantoate|3-oxopropanoate|coenzyme A|3-methyl-2-oxobutanoate|diphosphate|(R)-4-phosphopantothenate|3-hydroxypropanoate|acryloyl-CoA|H+|4-phosphopantetheine|NADH
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44
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superpathway of phylloquinol biosynthesis
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PWY-5863
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chloroplastic geranylgeranyl diphosphate reductase|O-succinylbenzoate synthase|2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase|DHNA phytyl transferase|O-succinylbenzoate-CoA ligase|DHNA-CoA thioesterase|isochorismate synthase|o-succinylbenzoate--CoA ligase|PHYLLO [multifunctional]|2-phytyl-1,4-naphthoquinone methyltransferase menG|naphthoyl-CoA synthase|demethylphylloquinone dehydrogenase|1,4-dihydroxy-2-naphthoate phytyltransferase|geranylgeranyl pyrophosphate synthase|2-phytyl-1,4-naphthoquinone methyltransferase|1,4-dihydroxy-2-naphthoyl-CoA hydrolase
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S-adenosyl-L-methionine|demethylphylloquinol|NADPH|2-carboxy-1,4-naphthoquinol|geranylgeranyl diphosphate|H2O|demethylphylloquinone|4-(2-carboxyphenyl)-4-oxobutyryl-CoA|isochorismate|NADP+|1,4-dihydroxy-2-naphthoyl-CoA|isopentenyl diphosphate|phytyl diphosphate|pyruvate|S-adenosyl-L-homocysteine|H+|2-carboxy-1,4-naphthoquinone|tetrahydrogeranylgeranyl diphosphate|coenzyme A|phylloquinol|chorismate|diphosphate|CO2|(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate|2-succinylbenzoate|2-oxoglutarate|2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate|(2E,6E)-farnesyl diphosphate|dihydrogeranylgeranyl diphosphate
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44
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enterobactin biosynthesis
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ENTBACSYN-PWY
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isochorismate synthase 1|holo-[acyl carrier protein] synthase 2|2,3-dihydroxybenzoate-AMP ligase, subunit of enterobactin synthase|holo-[acyl-carrier-protein] synthase|phosphopantetheinyl transferase, subunit of enterobactin synthase|2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase|holo-EntB dimer, subunit of enterobactin synthase|holo [EntF peptidyl-carrier protein], subunit of enterobactin synthase
|
H2O|L-serine|NAD+|(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate|L-seryl-adenylate|isochorismate|diphosphate|2,3-dihydroxybenzoate|adenosine 3,5-bisphosphate|chorismate|H+|2,3-dihydroxybenzoyl adenylate|pyruvate|NADH|enterobactin|coenzyme A
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44
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superpathway of thiamine diphosphate biosynthesis III (eukaryotes)
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THISYNARA-PWY
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thiamine pyrophosphokinase|thiamine pyrophosphokinase 1|hydroxymethylpyrimidine phosphate (HMP-P) kinase [multifunctional]|HMP/HMP-P kinase and thiaminase II|4-amino-2-methyl-5-phosphomethylpyrimidine kinase|phosphomethylpyrimidine synthase|thiamine pyrophosphokinase 2|TMP diphosphorylase/hydroxyethylthiazole kinase|thiazole synthase|thiamine phosphate phosphatase
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S-adenosyl-L-methionine|a protein-L-cysteine|glycine|4-methyl-5-(2-phosphooxyethyl)thiazole|2-carboxylate-4-methyl-5-beta-(ethyl adenosine 5-diphosphate) thiazole|4-amino-2-methyl-5-(diphosphomethyl)pyrimidine|L-methionine|H2O|NAD+|thiamine|phosphate|formate|CO2|5-deoxyadenosine|4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine|nicotinamide|carbon monoxide|diphosphate|thiamine phosphate|H+|thiamine diphosphate|a protein-2-aminoprop-2-enoate
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44
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heme biosynthesis I (aerobic)
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HEME-BIOSYNTHESIS-II
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protoporphyrinogen oxidase|coproporphyrinogen-III oxidase|uroporphyrinogen decarboxylase|coproporphyrinogen III oxidase|protoporphyrinogen IX oxidase isozyme II|ferrochelatase
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coproporphyrinogen III|H2O|uroporphyrinogen-III|protoporphyrinogen IX|Fe2+|hydrogen peroxide|ferroheme b|H+|protoporphyrin IX|CO2|oxygen
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44
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phosphatidylcholine acyl editing
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PWY-6803
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acyl-CoA:lysophosphatidylcholine acyltransferase
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a 2-acyl 1-lyso-phosphatidylcholine|H2O|coenzyme A|diphosphate|H+
|
44
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queuosine biosynthesis
|
PWY-6700
|
7-cyano-7-deazaguanine reductase|tRNA-guanine transglycosylase|S-adenosylmethionine:tRNA ribosyltransferase-isomerase|tRNA-guanine transglycosylase [Tgt]3|glutamyl-Q tRNAAsp synthetase gluQ|7-cyano-7-deazaguanine reductase [QueF]2|epoxyqueuosine reductase|epoxyqueuosine reductase queG|S-adenosylmethionine:tRNA ribosyltransferase-isomerase queA
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S-adenosyl-L-methionine|L-methionine|H2O|NADPH|adenine|a 7-aminomethyl-7-deazaguanosine34 in tRNA|preQ1|NADP+|preQ0|a queuosine34 in tRNA|guanine|H+|a guanine34 in tRNA|an epoxyqueuosine34 in tRNA
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44
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vibriobactin biosynthesis
|
PWY-6374
|
Vibrio cholerae apo-VibF protein [VibF]|vibriobactin-specific 2,3-dihydroxybenzoate-AMP ligase, subunit of vibriobactin synthase complex|holo-[VibB protein dimer], subunit of vibriobactin synthase complex|vibriobactin-specific isochorismate synthase|vibriobactin-specific 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase|VibH norspermidine-2,3-dihydroxybenzoate synthase|Vibrio cholerae apo-VibF protein, subunit of vibriobactin synthase complex
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H2O|NAD+|isochorismate|diphosphate|2,3-dihydroxybenzoate|chorismate|dihydroxyphenyl-5-methyloxazoline-norspermidine-2,3-dihydroxybenzoate|vibriobactin|L-threonine|H+|norspermidine-2,3-dihydroxybenzoate|(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate|pyruvate|NADH|2,3-dihydroxybenzoyl adenylate
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44
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