The statistics of assembled

Data	Number	Length (bp) of transcripts
		Total	Min	Max	Avg	N50
transcript	272,548	320,552,948	200	16,437	1,176	1,703
locus	66,322	50,489,584	200	15,368	761	1,249

The statistics of assembled DB for annotation

DB	protein sequence #	species #
Phytozome all protein	1,530,047	41 species
GO	366,327	all species
NCBI NR	24,070,523	all species

The statistics of annotation

Data	PJA transcript #	PJA locus #	# of proteins in DB
Assembled #	272,548	66,322	-
Phytozome annotation	185,137 (68%)	32,995 (50%)	45,789
GO annotation	+ 99	76	35
NCBI NR annotation	+ 7,729	5,590	2,223

Raw data

Raw data name	description	# of reads	Avg length (bp)	Total length (bp)
T1302R0715_1.fq	PJA Root	23,982,292	100	2,398,229,200
T1302R0715_2.fq		23,982,292	100	2,398,229,200
T1302R0716_1.fq	PJA Stem	25,301,983	100	2,530,198,300
T1302R0716_2.fq		25,301,983	100	2,530,198,300
T1302R0717_1.fq	PJA Tuber	24,941,933	100	2,494,193,300
T1302R0717_2.fq		24,941,933	100	2,494,193,300
T1302R0718_1.fq	PJA Stolen tuber	25,031,382	100	2,503,138,200
T1302R0718_2.fq		25,031,382	100	2,503,138,200
T1302R0719_1.fq	PJA Leaf	22,793,363	100	2,279,336,300
T1302R0719_2.fq		22,793,363	100	2,279,336,300
total	5 sample	244,101,906	100	24,410,190,600

Trimmed data

File name	descript	# of reads	Avg length	Total length (bp)	*Trimmed/raw
T1302R0715_1.fq	PJA Root	23,982,292	72.73	1,744,347,049	72.73%
T1302R0715_2.fq		23,982,292	72.79	1,745,716,777	72.79%
T1302R0716_1.fq	PJA Stem	25,301,983	73.57	1,861,484,319	73.57%
T1302R0716_2.fq		25,301,983	73.91	1,870,185,846	73.91%
T1302R0717_1.fq	PJA Tuber	24,941,933	71.41	1,780,992,719	71.41%
T1302R0717_2.fq		24,941,933	70.19	1,750,754,573	70.19%
T1302R0718_1.fq	PJA Stolen tuber	25,031,382	71.88	1,799,313,654	71.88%
T1302R0718_2.fq		25,031,382	70.5	1,764,816,854	70.50%
T1302R0719_1.fq	PJA Leaf	22,793,363	74.35	1,694,614,832	74.35%
T1302R0719_2.fq		22,793,363	76.38	1,741,055,326	76.38%
total	5 sample	244,101,906	72.77	31,962,959,238	72.77%

LengSort data

File name	descript	# of reads	Avg length	Total length (bp)	*LengSort/raw
T1302R0715_1.fq	PJA Root	20,226,701	79.61	1,610,172,884	67.14%
T1302R0715_2.fq		20,226,701	82.49	1,668,585,054	69.58%
T1302R0716_1.fq	PJA Stem	21,515,484	80.04	1,722,015,976	68.06%
T1302R0716_2.fq		21,515,484	83.28	1,791,867,796	70.82%
T1302R0717_1.fq	PJA Tuber	20,750,963	78.45	1,627,852,884	65.27%
T1302R0717_2.fq		20,750,963	80.34	1,667,048,041	66.84%
T1302R0718_1.fq	PJA Stolen tuber	20,807,366	78.98	1,643,458,462	65.66%
T1302R0718_2.fq		20,807,366	80.85	1,682,181,146	67.20%
T1302R0719_1.fq	PJA Leaf	19,807,302	80.18	1,588,170,929	69.68%
T1302R0719_2.fq		19,807,302	84.5	1,673,719,048	73.43%
total	5 sample	206,215,632	80.87	16,675,072,220	68.37%